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Tropical shallow-water habitats represent the marine environments with the greatest biodiversity; however, these habitats are the most vulnerable to climate warming. Corals, seagrasses, and macroalgae play a crucial role in the structure, functions, and processes of the coastal ecosystems. Understanding their growth and physiological responses to elevated temperature and interspecific sensitivity is a necessary step to predict the fate of future coastal community. Six species representatives, including Pocillopora acuta, Porites lutea, Halophila ovalis, Thalassia hemprichii, Padina boryana, and Ulva intestinalis, collected from Phuket, Thailand, were subjected to stress manipulation for 5 days. Corals were tested at 27, 29.5, 32, and 34.5°C, while seagrasses and macroalgae were tested at 27, 32, 37, and 42°C. After the stress period, the species were allowed to recover for 5 days at 27°C for corals and 32°C for seagrasses and macroalgae. Non-destructive evaluation of photosynthetic parameters (Fv/Fm, Fv/F0, ϕPSII and rapid light curves) was carried out on days 0, 3, 5, 6, 8, and 10. Chlorophyll contents and growth rates were quantified at the end of stress, and recovery periods. An integrated biomarker response (IBR) approach was adopted to integrate the candidate responses (Fv/Fm, chlorophyll content, and growth rate) and quantify the overall temperature effects. Elevated temperatures were found to affect photosynthesis, chlorophyll content, and growth rates of all species. Lethal effects were detected at 34.5°C in corals, whereas adverse but recoverable effects were detected at 32°C. Seagrasses and macroalgae displayed a rapid decline in photosynthesis and lethal effects at 42°C. In some species, sublethal stress manifested as slower growth and lower chlorophyll content at 37°C, while photosynthesis remained unaffected. Among all, T. hemprichii displayed the highest thermotolerance. IBR provided evidence that elevated temperature affected the overall perf

Flinders University oceanography experts have described a new kind of cyclone in the Indian Ocean near Sumatra after observing satellite surface winds in the region.

The effect of tides on the Indonesian Throughflow (ITF) is explored in a regional ocean model of South East Asia. Our model simulations, with and without tidal forcing, reveal that tides drive only a modest increase in the ITF volume, heat and salt transports toward the Indian Ocean. However, tides drive large regional changes in these transports through Lombok Strait, Ombai Strait and the Timor Sea, and regulate the partitioning of the ITF amongst them. The effect of tidal mixing on the salinity and temperature profiles within the Indonesian Seas drives a small decrease in the heat and salt transports toward the Indian Ocean in all three exit passages. In contrast, the tidal residual circulation due to the interaction between the tides and the topography and stratification (including the effects of tidal mixing on the circulation) leads to a large decrease in the transports toward the Indian Ocean through the Lombok and Ombai straits, but a large increase through the Timor Sea. Hence, the small net contribution from tides to the ITF's volume, heat and salt transports is due to a compensation between large, but opposing tidal residual transports at the combined Lombok and Ombai straits and in the Timor Sea. Our results indicate that explicit representation of tides, often missing in Earth system models, is necessary to accurately capture the ITF's pathway and so the tracer transport from the Pacific into the Indian Ocean.

The Lombok Strait (LS), Ombai Strait (OS), and Timor Passage (TP) are three major outlets of the Indonesian Throughflow to the Indian Ocean. Here, sources and pathways of the LS, OS, and TP outflows are explored by a Lagrangian particle tracking analysis based on a ~3 km regional ocean model simulation. The Makassar Strait transport contributes to ~80%, ~75%, and ~45% of the LS, OS, and TP outflows, respectively. However, ~41% and ~19% of the TP and OS outflows stem from the Lifamatola Passage, which largely feeds the upper and intermediate layers of the outflows. The role of Karimata Strait is quite limited and restricted to the upper layer. It takes 1-2 years and 2-6 years for the Makassar Strait water to reach the OS and TP, respectively, whereas the Lifamatola Passage water passes through the OS (2-6 years) and TP (3-9 years) on a prolonged transit time. In the Banda Sea, the western boundary current is the main pathway toward the OS, while the waters to the TP tend to take a basin interior route.

As seawater temperature rises, repeated thermal bleaching events have negatively affected the reefs of the Andaman Sea for over decades. Studies on the coral-associated microbial diversity of prokaryotes and microbial eukaryotes (microbiome) in healthy and bleached corals are important to better understand the coral holobionts that involved augmented resistance to stresses, and this information remains limited in the Andaman Sea of Thailand. The present study thereby described the microbiomes of healthy (unbleached) and bleached colonies of four prevalent corals, Acropora humilis, Platygyra sp., Pocillopora damicornis, and Porites lutea, along with the surrounding seawater and sediments, that were collected during a 2016 thermal bleaching event, using 16S and 18S rRNA genes next-generation sequencing (NGS). Both prokaryotic and eukaryotic microbes showed isolated community profiles among sample types (corals, sediment, and seawater) [analysis of similarities (ANOSIM): p = 0.038 for prokaryotes, p < 0.001 for microbial eukaryotes] and among coral genera (ANOSIM: p < 0.001 for prokaryotes and microbial eukaryotes). In bleached state corals, we found differences in microbial compositions from the healthy state corals. Prevalent differences shared among bleached coral genera (shared in at least three coral genera) included a loss of reported coral-beneficial microbes, such as Pseudomonadales, Alteromonadales, and Symbiodinium; meanwhile an increase of putative coral-pathogenic Malassezia and Aspergillus. This difference could affect carbon and nitrogen availability for coral growth, reflective of a healthy or bleached state. Our findings in part supported previously microbial dysbiosis knowledge of thermal bleaching coral microbiomes around South East Asia marine geography, and together ongoing efforts are to support the understanding and management of microbial diversity to reduce the negative impacts to corals in massive thermal bleaching events.

The seasonality of mesoscale eddy intensity in the southeastern tropical Indian Ocean (SETIO) is investigated using the latest eddy dataset and marine hydrological reanalysis data. The results show that the eddy intensity in an area to the southwest coast of the Java Island has prominent seasonality-eddies in this area are relatively weak during the first half of the year but tend to enhance in August and peak in October. Further analysis reveals that the strong eddies in October are actually developed from the ones mainly formed in July to September, and the barotropic instability and baroclinic instability are the key dynamics for eddy development, but each plays a different role at different development stages. The barotropic instability resulting from the horizontal shear of surface current plays an important role in the early stage of eddy development. However, in the late development stage, the baroclinic instability induced by the sloping pycnocline becomes the major energy contributor of eddy development.

The Java Trench is the only subduction trench in the Indian Ocean that extends to the hadal zone (> 6,000 m water depth), and except for sevenbenthic trawls acquired around the 1950s, there has been little to no sampling at hadal depths undertaken since. In 2019, we undertook a 5-day expedition comprising a scientific dive using a full ocean depth-rated submersible, the DSV Limiting Factor, seven hadal-lander deployments, and high-resolution bathymetric survey. The submersible performed a video transect from the deepest point of the trench, up a 150 m high near-vertical escarpment located on the forearc, and then across a plateau at a depth of ∼7,050 m to make in situ observations of the habitat heterogeneity and biodiversity inhabiting these hadal depths. We found the Java Trench hadal community to be diverse and represented by 10 phyla, 21 classes, 34 orders and 55 families, with many new records and extensions in either depth or geographic range, including a rare encounter of a hadal ascidian. The submersible transect revealed six habitats spanning the terrain. The deepest trench axis comprised fine-grained sediments dominated by holothurians, whereas evidence of active rock slope failure and associated talus deposits were prevalent in near-vertical and vertical sections of the escarpment. Sediment pockets and sediment pouring down the steep wall in "chutes" were commonly observed. The slope terrain was dominated by two species in the order Actiniaria and an asteroid, as well as 36 instances of orange, yellow, and white bacterial mats, likely exploiting discontinuities in the exposed bedrock, that may indicate a prevalence of chemosynthetic input into this hadal ecosystem. Near the top of the escarpment was an overhang populated by > 100 hexactinellid (glass) sponges. The substrate of the plateau returned to fine-grained sediment, but with a decreased density and diversity of epifauna relative to the trench floor. By providing the first visual insights of the h

With marine heatwaves of varying severity identified in Australian waters over the summer, a new study of a remote coral reef in the north-west has found that they can recover from bleaching events caused by heatwaves, and other disturbances, as long as there is enough time.